PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_16705A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family LBD
Protein Properties Length: 221aa    MW: 22967.9 Da    PI: 8.2129
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_16705AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.84.7e-302103197
                     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 
                                +C++C+vlr++C++dCvl+p++     +++q +++ +v+k+FG++ ++++l+a+pe++r+++++sl+yeA  r+ +Pv+Gavg+
  Oropetium_20150105_16705A   2 SCNGCRVLRKGCSEDCVLRPCLqwiesAEAQGHATVFVAKFFGRAGLMSFLTAVPETQRPAVFQSLLYEAAGRTINPVSGAVGL 85 
                                6*********************9999777889**************************************************** PP

                     DUF260  80 ilklqqqleqlkaelall 97 
                                + +++++l+q+++e++l+
  Oropetium_20150105_16705A  86 LGSGSWHLCQAAVETVLR 103
                                ************998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.2971107IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-252101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEDCVLR PCLQWIESAE AQGHATVFVA KFFGRAGLMS FLTAVPETQR  60
PAVFQSLLYE AAGRTINPVS GAVGLLGSGS WHLCQAAVET VLRGGGIRPL PELDGGGGGG  120
GGAAADDTDR RDTFAFTARR TVGCSTFSAA KRATRIAAPE RAPSCDLGLW LSPESPPTTP  180
GERRPRKRPG TPSMNSEDSV TTTSSGGGGG REPELLNLFV *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0698131e-121AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958181.11e-110PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN117e-78LBD37_ARATH; LOB domain-containing protein 37
TrEMBLK3ZWM91e-110K3ZWM9_SETIT; Uncharacterized protein
STRINGSi031011m1e-110(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.19e-61LOB domain-containing protein 37